Two new gene clusters involved in the degradation of plant cell wall from the fecal microbiota of Tunisian dromedary
Identifieur interne : 000451 ( Main/Exploration ); précédent : 000450; suivant : 000452Two new gene clusters involved in the degradation of plant cell wall from the fecal microbiota of Tunisian dromedary
Auteurs : Rihab Ameri [Tunisie] ; Elisabeth Laville [France] ; Gabrielle Potocki-Véronèse [France] ; Sahar Trabelsi [Tunisie] ; Monia Mezghani [Tunisie] ; Fatma Elgharbi [Tunisie] ; Samir Bejar [Tunisie]Source :
- PLoS ONE [ 1932-6203 ] ; 2018.
Descripteurs français
- KwdFr :
- Analyse de séquence (MeSH), Animaux (MeSH), Annotation de séquence moléculaire (MeSH), Cellules végétales (métabolisme), Cellulose (métabolisme), Chameaux (microbiologie), Famille multigénique (génétique), Fèces (microbiologie), Microbiote (génétique), Paroi cellulaire (microbiologie), Paroi cellulaire (métabolisme), Polyosides (métabolisme).
- MESH :
- génétique : Famille multigénique, Microbiote.
- microbiologie : Chameaux, Fèces, Paroi cellulaire.
- métabolisme : Cellules végétales, Cellulose, Paroi cellulaire, Polyosides.
- Analyse de séquence, Animaux, Annotation de séquence moléculaire.
English descriptors
- KwdEn :
- Animals (MeSH), Camelus (microbiology), Cell Wall (metabolism), Cell Wall (microbiology), Cellulose (metabolism), Feces (microbiology), Microbiota (genetics), Molecular Sequence Annotation (MeSH), Multigene Family (genetics), Plant Cells (metabolism), Polysaccharides (metabolism), Sequence Analysis (MeSH).
- MESH :
- chemical , metabolism : Cellulose, Polysaccharides.
- genetics : Microbiota, Multigene Family.
- metabolism : Cell Wall, Plant Cells.
- microbiology : Camelus, Cell Wall, Feces.
- Animals, Molecular Sequence Annotation, Sequence Analysis.
Abstract
Dromedaries are capable of digesting plant cell wall with high content of lignocellulose of poor digestibility. Consequently, their intestinal microbiota can be a source of novel carbohydrate-active enzymes (CAZymes). To the best of our knowledge, no data are available describing the biochemical analysis of enzymes in dromedary intestinal microbiota. To investigate new hydrolytic enzymes from the dromedary gut, a fosmid library was constructed using metagenomic DNA from feces of non-domestic adult dromedary camels living in the Tunisian desert. High-throughput functional screening of 13756 clones resulted in 47 hit clones active on a panel of various chromogenic and non-chromogenic glycan substrates. Two of them, harboring multiple activities, were retained for further analysis. Clone 26H3 displayed activity on AZO-CM-cellulose, AZCL Carob galactomannan and Tween 20, while clone 36A23 was active on AZCL carob galactomannan and AZCL barley β-glucan. The functional annotation of their sequences highlighted original metagenomic loci originating from bacteria of the Bacteroidetes/Chlorobi group, involved in the metabolization of mannosides and β-glucans thanks to a complete battery of endo- and exo-acting glycoside hydrolases, esterases, phosphorylases and transporters.
Url:
DOI: 10.1371/journal.pone.0194621
PubMed: 29601586
PubMed Central: 5877837
Affiliations:
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Le document en format XML
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xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratoire de Biotechnologie Microbienne et d'Ingénierie des Enzymes (LBMIE), Centre of Biotechnology of Sfax (CBS), University of Sfax, Sfax</wicri:regionArea></affiliation></author><author><name sortKey="Bejar, Samir" sort="Bejar, Samir" uniqKey="Bejar S" first="Samir" last="Bejar">Samir Bejar</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Laboratoire de Biotechnologie Microbienne et d'Ingénierie des Enzymes (LBMIE), Centre of Biotechnology of Sfax (CBS), University of Sfax, Sfax, Tunisia</addr-line></nlm:aff><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratoire de Biotechnologie Microbienne et d'Ingénierie des Enzymes (LBMIE), Centre of Biotechnology of Sfax (CBS), University of Sfax, Sfax</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Camelus (microbiology)</term><term>Cell Wall (metabolism)</term><term>Cell Wall (microbiology)</term><term>Cellulose (metabolism)</term><term>Feces (microbiology)</term><term>Microbiota (genetics)</term><term>Molecular Sequence Annotation (MeSH)</term><term>Multigene Family (genetics)</term><term>Plant Cells (metabolism)</term><term>Polysaccharides (metabolism)</term><term>Sequence Analysis (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence (MeSH)</term><term>Animaux (MeSH)</term><term>Annotation de séquence moléculaire (MeSH)</term><term>Cellules végétales (métabolisme)</term><term>Cellulose (métabolisme)</term><term>Chameaux (microbiologie)</term><term>Famille multigénique (génétique)</term><term>Fèces (microbiologie)</term><term>Microbiote (génétique)</term><term>Paroi cellulaire (microbiologie)</term><term>Paroi cellulaire (métabolisme)</term><term>Polyosides (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cellulose</term><term>Polysaccharides</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Microbiota</term><term>Multigene Family</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Famille multigénique</term><term>Microbiote</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cell Wall</term><term>Plant Cells</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Chameaux</term><term>Fèces</term><term>Paroi cellulaire</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Camelus</term><term>Cell Wall</term><term>Feces</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Cellules végétales</term><term>Cellulose</term><term>Paroi cellulaire</term><term>Polyosides</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Molecular Sequence Annotation</term><term>Sequence Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term><term>Animaux</term><term>Annotation de séquence moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Dromedaries are capable of digesting plant cell wall with high content of lignocellulose of poor digestibility. Consequently, their intestinal microbiota can be a source of novel carbohydrate-active enzymes (CAZymes). To the best of our knowledge, no data are available describing the biochemical analysis of enzymes in dromedary intestinal microbiota. To investigate new hydrolytic enzymes from the dromedary gut, a fosmid library was constructed using metagenomic DNA from feces of non-domestic adult dromedary camels living in the Tunisian desert. High-throughput functional screening of 13756 clones resulted in 47 hit clones active on a panel of various chromogenic and non-chromogenic glycan substrates. Two of them, harboring multiple activities, were retained for further analysis. Clone 26H3 displayed activity on AZO-CM-cellulose, AZCL Carob galactomannan and Tween 20, while clone 36A23 was active on AZCL carob galactomannan and AZCL barley β-glucan. The functional annotation of their sequences highlighted original metagenomic loci originating from bacteria of the Bacteroidetes/Chlorobi group, involved in the metabolization of mannosides and β-glucans thanks to a complete battery of endo- and exo-acting glycoside hydrolases, esterases, phosphorylases and transporters.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kayouli, C" uniqKey="Kayouli C">C Kayouli</name></author><author><name sortKey="Jouany, J" uniqKey="Jouany J">J Jouany</name></author><author><name sortKey="Demeyer, D" uniqKey="Demeyer D">D Demeyer</name></author><author><name sortKey="Taoueb, H" uniqKey="Taoueb H">H Taoueb</name></author><author><name sortKey="Dardillat, C" uniqKey="Dardillat C">C Dardillat</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Samsudin, Aa" uniqKey="Samsudin A">AA Samsudin</name></author><author><name sortKey="Evans, Pn" uniqKey="Evans P">PN 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uniqKey="Reyes Uarte D">D Reyes‐Duarte</name></author><author><name sortKey="Santos, Va" uniqKey="Santos V">VA Santos</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>France</li><li>Tunisie</li></country></list><tree><country name="Tunisie"><noRegion><name sortKey="Ameri, Rihab" sort="Ameri, Rihab" uniqKey="Ameri R" first="Rihab" last="Ameri">Rihab Ameri</name></noRegion><name sortKey="Bejar, Samir" sort="Bejar, Samir" uniqKey="Bejar S" first="Samir" last="Bejar">Samir Bejar</name><name sortKey="Elgharbi, Fatma" sort="Elgharbi, Fatma" uniqKey="Elgharbi F" first="Fatma" last="Elgharbi">Fatma Elgharbi</name><name sortKey="Mezghani, Monia" sort="Mezghani, Monia" uniqKey="Mezghani M" first="Monia" last="Mezghani">Monia Mezghani</name><name sortKey="Trabelsi, Sahar" sort="Trabelsi, Sahar" uniqKey="Trabelsi S" first="Sahar" last="Trabelsi">Sahar Trabelsi</name></country><country name="France"><noRegion><name sortKey="Laville, Elisabeth" sort="Laville, Elisabeth" uniqKey="Laville E" first="Elisabeth" last="Laville">Elisabeth Laville</name></noRegion><name sortKey="Potocki Veronese, Gabrielle" sort="Potocki Veronese, Gabrielle" uniqKey="Potocki Veronese G" first="Gabrielle" last="Potocki-Véronèse">Gabrielle Potocki-Véronèse</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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